PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00001.504
Common NameAMTR_s00001p00272070, LOC18424562
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 390aa    MW: 43205.8 Da    PI: 7.08
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00001.504genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.6e-13187238155
                                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                               +r++h ++Er+RR+++N+ ++ Lr+l+P +     ++ + a+i   A++++k+L+
  evm_27.model.AmTr_v1.0_scaffold00001.504 187 QRMTHIAVERNRRKQMNEHLNALRSLMPAS---FIQRGDQASIIGGAIDFVKELE 238
                                               79***************************9...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.58E-13185242No hitNo description
PROSITE profilePS5088815.491186237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16186255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-10187238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-14187251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-11192243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MQGPIDPCCL QAFVEHQTLE CLDQGNGVDL GAPAWAPTLG AEGLRLGDNW FTSFCSLSPQ  60
KSAMPNLSFL NILEPARASG LCPYFMDSSH IQALELESCI THVSETYSPE KPGAKDIRKL  120
EEAASSVNRE PNSPENGRDH NSGSSSGWVR ELRAQPEAKH LSTGAVRERK KRKRSKACKN  180
SREVESQRMT HIAVERNRRK QMNEHLNALR SLMPASFIQR GDQASIIGGA IDFVKELEQL  240
LQSLQAKKQT RQSEEGYSPT SSTVPFNGFF SSPQYTTYSN FKYMVDGLMD QRGNEFKAEN  300
KSAVADIEVT LIQTHANLKI LSPRRPGQLL KTIAALENLE LTILHLNITT IQHSVLYSFN  360
LKIEEGCKLG SADEIAAAVH QIFSFINEN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173RKKRKR
2169174KKRKRS
3187198RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006829211.10.0PREDICTED: transcription factor bHLH94
SwissprotQ56YJ81e-67FAMA_ARATH; Transcription factor FAMA
TrEMBLW1NLC00.0W1NLC0_AMBTC; Uncharacterized protein
STRINGVIT_15s0048g02510.t011e-102(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.19e-69bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]